| Thesis (Ph. D.)--University of Rochester. Department of Computer Science, 2020. | | A long-standing goal of the medical community is to present and analyze medical images efficiently and intelligently. On the one hand, it means to find efficient ways to acquire high-quality medical images that can readily be used by healthcare providers. On the other hand, it means to discover intelligent ways to interpret medical images to facilitate the healthcare delivery. To this end, researchers and medical professionals usually seek to use computerized systems that are empowered by machine learning techniques for the processing of medical images. A pivotal step in applying machine learning is to obtain informative representations that well describe medical images. Conventionally, this is performed with manual feature engineering which however requires considerable domain expertise in medicine. A possible workaround is to allow the model to automatically discover latent representations about the target domain from raw data. To this end, this thesis focuses on deep learning which is only a subset of the broader family of machine learning, but has recently made unprecedented progress and exhibits incredible ability in discovering intricate structures from high dimensional data. For many computer vision tasks, deep learning approaches have achieved state-of-the-art performance by a significant margin. This thesis develops deep learning models and techniques for medical image analysis, reconstruction and synthesis. In medical image analysis, we concentrate on understanding the content of the medical images and giving guidance to medical practitioners. In particular, we investigate deep learning ways to address classification, detection, segmentation and registration of medical images. In medical image reconstruction and synthesis, we propose to use deep learning ways to inherently learn the medical data space and effectively synthesize realistic medical images. For the reconstruction, we aim to generate high-quality medical images with fewer artifacts. For the synthesis, our goal is to generate realistic medical images to help the learning of medical image analysis or reconstruction models. The contribution of this thesis work is threefold. First, we propose a variety of approaches in leveraging deep learning to solve problems in medicine. Second, we show the importance and effectiveness of medical knowledge fusion in the design of deep learning architectures. Third, we show the potential of deep generative models in addressing medical image reconstruction and synthesis problems. | Contributor(s): | - Author ORCID:
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| Primary Item Type: | Thesis | Identifiers: | Local Call No. AS38.661 | Language: | English | Subject Keywords: | Artificial intelligence; Computer vison; Deep learning; Medical image analysis; Medical image computing; | Sponsor - Description: | - | - | - Award #1722847 | - | - | - | First presented to the public: | 3/26/2020 | Originally created: | 2020 | Original Publication Date: | 2020 | Previously Published By: | University of Rochester | Place Of Publication: | Rochester, N.Y. | Citation: | | Extents: | Number of Pages - xxx, 206 pages | Illustrations - illustrations (some color) | License Grantor / Date Granted: | Walter Nickeson / 2020-03-26 12:36:48.298 ( ) | Date Deposited | 2020-03-26 12:36:48.298 | Submitter: | Walter Nickeson | Copyright © This item is protected by copyright, with all rights reserved. All Versions Thumbnail | Name | Version | Created Date | | Deep learning methods for medical image computing. | | 2020-03-26 12:36:48.298 |
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Reason for withdraw :* | | Display metadata: | | Withdraw all versions: | | Reason for reinstate :* | | Reinstate all versions: | | Do you want to delete this Institutional Publication? Deep learning for medical image interpretationAbstract/contents, description. Type of resource | text | Form | electronic resource; remote; computer; online resource | Extent | 1 online resource. | Place | California | Place | [Stanford, California] | Publisher | [Stanford University] | Copyright date | 2021; ©2021 | Publication date | 2021; 2021 | Issuance | monographic | Language | English | Creators/Contributors Author | Rajpurkar, Pranav Samir | Degree supervisor | Liang, Percy | Thesis advisor | Liang, Percy | Thesis advisor | Bernstein, Michael S, 1984- | Degree committee member | Bernstein, Michael S, 1984- | Associated with | Stanford University, Computer Science Department | Bibliographic information Statement of responsibility | Pranav Rajpurkar. | Note | Submitted to the Computer Science Department. | Thesis | Thesis Ph.D. Stanford University 2021. | Location | | Access conditions Version 1 | May 9, 2024 | You are viewing this version | | Each version has a distinct URL, but you can use this PURL to access the latest version. https://purl.stanford.edu/jc097kx0188 Also listed inLoading usage metrics... - DSpace@MIT Home
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Learning efficient image processing pipelinesOther ContributorsTerms of use, description, date issued, collections. Show Statistical Information Academia.edu no longer supports Internet Explorer. To browse Academia.edu and the wider internet faster and more securely, please take a few seconds to upgrade your browser . Enter the email address you signed up with and we'll email you a reset link. Download Free PDF (THESIS) Diabetic Retinopathy Classification from Retinal Images using Machine Learning Approaches2020, Thesis for Bachelor of Science in Computer Science & Engineering Diabetic Retinopathy is one of the common eye diseases and is a diabetes complication that affects eyes. Diabetic retinopathy may cause no symptoms or only mild vision problems. Eventually, it can cause blindness. So early detection of symptoms could help to avoid blindness. In this thesis, we present some experiments on some features of Diabetic Retinopathy like properties of exudates, properties of blood vessels and properties of microaneurysm. Using the features, we can classify healthy, mild non-proliferative, moderate non-proliferative, severe non-proliferative and proliferative stage of DR. Support Vector Machine, Random Forest and Naive Bayes classifiers are used to classify the stages. Finally, Random Forest is found to be the best for higher accuracy, sensitivity and specificity of 76.5%, 77.2% and 93.3% respectively. Related papersInternational Conference on Advanced Engineering, Technology and Applications (ICAETA-2021), 2021 Diabetic Retinopathy is one of the most familiar diseases and is a diabetes complication that affects eyes. Initially diabetic retinopathy may cause no symptoms or only mild vision problems. Eventually, it can cause blindness. So early detection of symptoms could help to avoid blindness. In this paper, we present some experiments on some features of Diabetic Retinopathy like properties of exudates, properties of blood vessels and properties of microaneurysm. Using the features, we can classify healthy, mild non-proliferative, moderate non-proliferative, severe non-proliferative and proliferative stage of DR. Support Vector Machine, Random Forest and Naive Bayes classifiers are used to classify the stages. Finally, Random Forest is found to be the best for higher accuracy, sensitivity and specificity of 76.5%, 77.2% and 93.3% respectively. International Journal of Advance Research and Innovative Ideas in Education, 2018 Diabetes Retinopathy is human eye affection.It can affect to retina of eye and causes blindness. Diabetes is supposed the one of the most deadliest disease nowadays. Most of the work in this field is based on disease detection or manual extraction of features, but this paper proposed automatic analysis of this disease into different stages using machine learning. This paper presents the preprocessing technique to remove the noise reduction and hence classify high resolution image into 3 stages based on severity by using (SVM,Navie Bayes and LR) algorithm This results clearly show that the advanced technique outperforms over the usable techniques in terms of sensitivity, accuracy and error rate.There are so many datasets are available publicly such as kaggle ,stare ,Drive. The International journal of analytical and experimental modal analysis The damage in the blood vessels of human eye in retina defines the disease known as Diabetic retinopathy (DR).The word "Retinopathy" is specified due to abrasion in the blood vessel of light-sensitive membrane of eye called "Retina". Diabetes Mellitus is a kind of disease that occurs in retina due to high sugar level in the blood and it is the root cause of Diabetic Retinopathy.As the blood cells circulate in retina, it blocks the blood vesselsand thus the blood supply is stopped. Therefore for nourishment of retina; the eye develops new blood vessels which is improper in growth and easily leads to leakagewhich can also lead to loss of vision.The major goal is automatically detect and classify the DR using appropriate algorithm by giving retinal image as an input.This paper specifies the related works on detection and classification of diabetic retinopathy under the domain machine learning. International Journal of Engineering Technology and Management Sciences, 2024 Diabetic Retinopathy (DR) is one of the major causes of blindness. DR mutilates the retinal blood vessels of a patient having diabetes. The DR has two major types: First one is Non-Proliferative Diabetic Retinopathy (NPDR) and second is Proliferative Diabetic Retinopathy (PDR). PDR is the advanced stage of DR which leads to neo vascularization, it is expected that the number of DR patients is to increase from 382 million to 592 million by 2028. In the early stages of the DR the patients were asymptomatic but in advanced stages, it leads to floaters, blurred vision, distortions, and progressive visual acuity loss. It is difficult but utmost important to detect the DR in early stages to avoid the worse effect of latter stages. The colour fundus images were used for the diagnosis of DR, the manual analysis could only be done by highly trained domain experts but it is bit expensive in terms of time and cost. Hence, it is important to use computer vision methods to automatically analyse the fundus images of Retina and assist the physicians/radiologists. The computer vision-based methods are divided into hand-on engineering and end-to-end learning. The hand-on engineering methods extract features using traditional approaches such as HoG, SIFT, LBP, Gabor filters, which failed to encode the variations in scale, rotation, and illumination. The end-to-end leaning automatically learns the hidden rich features and thus performs better classification. International Journal on Computer Science and Engineering, 2018 Diabetic Retinopathy is human eye disease which causes damage to retina of eye and it may eventually lead to complete blindness. Detection of diabetic retinopathy in early stage is essential to avoid complete blindness. Many physical tests like visual acuity test, pupil dilation, optical coherence tomography can be used to detect diabetic retinopathy but they are very time consuming and costly.There are many features present in retina but the exudates feature which is one of the primary signs of diabetic retinopathy and which is a main cause of blindness that could be prevented with the help of this automatic detection process. In feature extraction Pupil dilation is important step in the normal screening process but this affects Diabetes vision. The automatic detection process reduces examination time, and increase accuracy. In this paper we provide review on many techniques and algorithms that helps to diagnose Diabetic Retinopathy in retinal fundus images. This paper also reviews, classifies and compares the algorithms and techniques previously proposed in order to develop better and more effective algorithms. Diabetic retinopathy is the retinal abnormality for the diabetic patient due to imbalanced blood glucose level. To help the ophthalmologist in diagnosing the diabetic retinopathy using retinal images taken from various publicly available databases, efficient classifiers are used to analyze the images and to identify the symptoms of diabetic retinopathy such as microanueryms, hemorrhages, exudates, cotton wool spots etc. The manual screening method of diabetic retinopathy is time consuming and it is difficult for the ophthalmologist in producing accurate results. Thus an automatic computerized system is enabled to detect the diabetic retinopathy with less time consumption and obtain effective results. In this paper, a brief survey is presented on the various classification methods used in the detection of diabetic retinopathy. The various classifiers are efficient in classifying diabetic retinopathy as proliferative and non-proliferative diabetic retinopathy. The machine learning classifiers such as Naïve Bayes, Gaussian, random forest, support vector machine and neural network achieves the greater accuracy of more than 90%. Using these algorithms severity grading of the abnormalities is also improved. Journal of Engineering Research, 2021 Diabetic Retinopathy (DR) is the complicatedness of diabetes that happens due to macular degeneration among Type II diabetic patients. The early symptom of this disease is predicted through annual eye checkups. Hence, one can save their vision at an early stage. Later on, it prompts retinal detachment. There is a requirement for awareness among diabetic patients about this disease to prevent their life from vision misfortune. Along these lines, there is a need for a computer-assisted method to analyze the disease. The proposed system used Adaptive Histogram Equalization (AHE) technique for image enhancement, Hop Field Neural Network for blood vessel segmentation, and Adaptive Resonance Theory (ART) for blood vessel classification. The proposed system analyzes the disease and classifies the disease level effectively with high accuracy. Also, the system notifies the users about the stages of the disease. The proposed system is evaluated with the clinical as well as open fundus image d... International Journal of Engineering Research and Technology (IJERT), 2020 https://www.ijert.org/diabetic-retinopathy-detection-using-machine-learning https://www.ijert.org/research/diabetic-retinopathy-detection-using-machine-learning-IJERTV9IS060170.pdf Diabetic retinopathy is a disease caused by uncontrolled chronic diabetes and it can cause complete blindness if not timely treated. Therefore early medical diagnosis of diabetic retinopathy and it medical cure is essential to prevent the severe side effects of diabetic retinopathy. Manual detection of diabetic retinopathy by ophthalmologist take plenty of time and patients need to suffer a lot at this time. An automated system can help detect diabetic retinopathy quickly and we can easily follow-up treatment to avoid further effects to the eye. This study proposes a machine learning method for extracting three features like exudates, hemorrhages, and micro aneurysms and classification using hybrid classifier which is a combination of support vector machine, k nearest neighbour, random forest, logistic regression, multilayer perceptron network. From the results of the experiments, the highest accuracy values 82%. Hybrid approach produced a precision score of 0.8119,Recall score of 0.8116 and f-measure score of 0.8028. Multimedia Tools and Applications, 2020 Loading Preview Sorry, preview is currently unavailable. 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Application of FPGA to Real‐Time Machine LearningHardware Reservoir Computers and Software Image Processing CentraleSupélec, Metz, FranceYou can also search for this author in PubMed Google Scholar - Nominated as an outstanding Ph.D. thesis by the Université libre de Bruxelles, Belgium
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Table of contents (7 chapters)Front matter, introduction. Piotr Antonik Online Training of a Photonic Reservoir ComputerBackpropagation with photonics, photonic reservoir computer with output feedback, towards online-trained analogue readout layer, real-time automated tissue characterisation for intravascular oct scans, conclusion and perspectives, back matter, authors and affiliations, about the author, bibliographic information. Book Title : Application of FPGA to Real‐Time Machine Learning Book Subtitle : Hardware Reservoir Computers and Software Image Processing Authors : Piotr Antonik Series Title : Springer Theses DOI : https://doi.org/10.1007/978-3-319-91053-6 Publisher : Springer Cham eBook Packages : Physics and Astronomy , Physics and Astronomy (R0) Copyright Information : Springer International Publishing AG, part of Springer Nature 2018 Hardcover ISBN : 978-3-319-91052-9 Published: 31 May 2018 Softcover ISBN : 978-3-030-08164-5 Published: 10 January 2019 eBook ISBN : 978-3-319-91053-6 Published: 18 May 2018 Series ISSN : 2190-5053 Series E-ISSN : 2190-5061 Edition Number : 1 Number of Pages : XXII, 171 Number of Illustrations : 60 b/w illustrations, 8 illustrations in colour Topics : Optics, Lasers, Photonics, Optical Devices , Image Processing and Computer Vision , Computational Intelligence , Artificial Intelligence Policies and ethics - Find a journal
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PhD thesis: Deep Learning for Image Processing in Optical Super-resolution Microscopy- Thesis : Image Analysis using Deep Learning for Optical Super-resolution Microscopy of Living Samples
- Supervisor 1 : Prof. Clemens Kaminski, Laser Analytics Group, Cambridge University
- Supervisor 2 : Prof. Pietro Lió, Computational Biology within Artificial Intelligence Group, Cambridge University
- Advisor : Dr Jérôme Boulanger, Senior Research at Laboratory for Molecular Biology, MRC
Imaging at high spatio-temporal resolution requires a trade-off with image quality leading to low signal-to-noise ratio in acquired data. This renders traditional image analysis methods to perform unreliably. In this thesis I propose methods for image reconstruction, denoising and segmentation using deep learning methods that are robust to noise. Charles Nicklas ChristensenPhd computer vision & ai. My research interests include computer vision, deep learning and imaging. |
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Image Processing, Machine Learning and Visualization for Tissue Analysis LESLIE SOLORZANO ISSN 1651-6214 ISBN 978-91-513-1173-9 urn:nbn:se:uu:diva-438775. Dissertation presented at Uppsala University to be publicly examined in Room IX, Universitetshuset, Biskopsgatan 3, Uppsala, Wednesday, 12 May 2021 at 13:00 for the degree
dependencies among image patches and enhance the learning diversity. Also, the architecture uses Monte Carlo (MC) dropout for measuring the uncertainty of image predictions and deciding whether an input image is accurate based on the gener-ated uncertainty score. The third contribution of the thesis introduces a novel model
I would like to express my sincerely appreciation to my PhD advisor, Prof. Charles A. Bouman, for his education and support. Prof. Bouman is an outstanding re-seaercher, an excellent teacher and a great friend. His passion about research and science, his attitude towards perfection, and his advices on not only being a top en-
This thesis develops deep learning models and techniques for medical image analysis, reconstruction and synthesis. In medical image analysis, we concentrate on understanding the content of the medical images and giving guidance to medical practitioners. In particular, we investigate deep learning ways to address classification, detection ...
Image Processing: Research O pportunities and Challenges. Ravindra S. Hegadi. Department of Computer Science. Karnatak University, Dharwad-580003. ravindrahegadi@rediffmail. Abstract. Interest in ...
to real-time image segmentation from image processing point of view. In this thesis, we apply several image processing algorithms and propose the corresponding hardware implementations for camera-based real-time vehicle detection. These algorithms include Fixed Block Size Motion Estimation (FBSME), Recon gurable Block Size Motion Esti-
Abstract. There have been rapid advances at the intersection of deep learning and medicine over the last few years, especially for the interpretation of medical images. In this thesis, I describe three key directions that present challenges and opportunities for the development of deep learning technologies for medical image interpretation.
In this dissertation, we develop a number of image processing techniques that are based on mathematical morphology. We also investigate the usability of a specific technique, the pattern spectrum ...
The high resolution of modern cameras puts significant performance pressure on image processing pipelines. Tuning the parameters of these pipelines for speed is subject to stringent image quality constraints and requires significant efforts from skilled programmers. Because quality is driven by perceptual factors with which most quantitative ...
PDF | The image classification is a classical problem of image processing, computer vision and machine learning fields. ... The original contribution of this thesis is an optimized, efficient, and ...
This thesis is concerned with the task of automatically generating image captions. In general, image captioning refers to the following problem: given an image, generate text that describes the image. ... Speci cally, this thesis introduces the use of text-to-text natural language processing for generation of image captions. The text-to-text ...
and feature learning ideas to hierarchical structures. The RNN models of this thesis obtain state of the art performance on paraphrase detection, sentiment analysis, rela-tion classi cation, parsing, image-sentence mapping and knowledge base completion, among other tasks. Chapter 2 is an introductory chapter that introduces general neural ...
Oulu University of Applied Sciences Information Technology, Internet Services. Author: Hung Dao Title of the bachelor's thesis: Image Classification Using Convolutional Neural Networks Supervisor: Jukka Jauhiainen Term and year of completion: Spring 2020 Number of pages: 31. The objective of this thesis was to study the application of deep ...
Differences between a normal retina and DR affected retina 14 3.3.2.1 Histogram: In an image processing context, the histogram of an image normally refers to a histogram of the pixel intensity values. This histogram is a graph showing the number of pixels in an image at each different intensity value found in that image.
short timescale. Indeed real-time image analysis of optical coherence tomography of atherosclerotic arteries may help expand the use of this technique in hospitals. Piotr Antoniks thesis is highly interdisciplinary. The theory on how to design, train, exploit and benchmark the experiments was supplied by ideas from machine
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Imaging at high spatio-temporal resolution requires a trade-off with image quality leading to low signal-to-noise ratio in acquired data. This renders traditional image analysis methods to perform unreliably. In this thesis I propose methods for image reconstruction, denoising and segmentation using deep learning methods that are robust to noise.
Most dissertations are 100 to 300 pages in length. All dissertations should be divided into appropriate sections, and long dissertations may need chapters, main divisions, and even subdivisions. Students should keep in mind that GSAS and many departments deplore overlong and wordy dissertations.