7 Biochemistry Lab Experiments that are Easier to Teach with Labster
You want the best biochemistry labs for your students. Maybe lesson planning is taking up too much time, you’re recycling the same labs over and over, or you’re a new teacher. Whatever the case, we’ve gathered 7 biochemistry lab experiments that you can teach your students. We’ve also matched accompanying virtual labs that can help teach some of the experiments.
- DNA/RNA Sequencing
- Gel Electrophoresis
- Antibodies & Antigens
- Blotting Methods
- Polymerase Chain Reaction (PCR)
ELISA stands for enzyme-linked immunosorbent assay. basic assay technique. Trying to capture a specific protein amongst thousands of types of proteins is like looking for a needle in a haystack, but it’s easier with this basic assay technique. Instructors can provide ELISA kits if budgets allow.
There are incubation times necessary with this method, so the collapsed time aspect of using a virtual lab is useful! Labster has an ELISA Virtual Lab where students can help a doctor quantify Factor IX protein, which is used for hemophilia drugs.
Figure alt text: Sealing an ELISA plate using a microplate seal in a virtual lab.
2.) DNA/RNA Sequencing
With the right equipment, DNA & RNA sequencing can be straightforward and easy. Fast and affordable sequencing matters, as it opens up a whole new world for biology/biochemistry research. There are a variety of ways to do sequencing, but they can be expensive - especially for a lab class.
Labster has a few sequencing labs, one being RNA Extraction: Sample and purify mRNA from pigs where students can learn how to extract RNA from pig fat tissue samples and how to purify messenger RNA using magnetic beads.
3.) Nutrition
There’s a great deal of biochemistry research done in the field of nutrition such as understanding how food relates to cancer and how food can promote health. A CUNY lab exercise guide outlines some different hands-on labs instructors can do such as “The Microbiology of Milk and Food.”
Some concepts can be difficult to get across to students in a regular lab or through lecturing. That’s where our 3D animations and interactivity are most impactful. Labster has a Carbohydrates virtual lab where students can visualize and explore how carbohydrates are broken down by the digestive system and taken up into the bloodstream.
Figure alt text: Reviewing various carbohydrates in a virtual lab.
4.) Gel Electrophoresis
This technique is used to separate components of a mixture, often DNA, RNA, or proteins. Kits are available to do this experiment in the classroom if the budget allows for it. Virtual lab simulations are a cost-effective alternative Not only are they helpful for learning the technique itself, but also to visualize the components.
In Labster’s Gel Electrophoresis virtual lab , students will solve a crime by using DNA fingerprinting to identify a thief. Students will use nucleic acid gel electrophoresis to separate and visualize DNA molecules and watch an animation to understand what happens inside the gel tank.
5.) Antibodies & Antigens
Antibodies and Antigens can be difficult to teach but Labster has a free 3D animation video on “Antigen-Antibody Binding - Why are some blood types incompatible?” Utilizing videos, interactive simulations, lectures, and images help to differentiate teaching approaches and support students in learning these concepts.
In Labster’s Antibodies virtual lab , learn about the concepts of antibodies and antigens, as well as the ABO and Rhesus blood grouping systems and their importance in blood transfusions. Then, they will help a young couple determine the potential risk for Rhesus disease in their unborn child.
Figure alt text: Tight antibody-antigen complex.
6.) Blotting Methods
Students need to use blotting methods to identify DNA, RNA, and other proteins. There are a variety of blots: Northern, Southern, Eastern, and Western (1). This technique can be done in the lab - but it is notoriously difficult at first. Practicing in a virtual lab helps students grasp the methods and understand how to analyze their results.
In our Western Blot virtual lab , students perform a western blot experiment to ultimately provide data and knowledge to identify a promising treatment for breast cancer.
7.) Polymerase Chain Reaction
Polymerase Chain Reaction (PCR) is used to amplify or make multiple copies of DNA (1). It can be expensive to run these labs as PCR labs are expensive and time-consuming. This is where virtual labs can help!
In the Polymerase Chain Reaction (PCR) simulation , students will be thrown right into a crime scene where a murder has taken place. After investigating the crime scene, their first task is to collect blood samples in the hope that the murderer has left traces of their DNA. A 3D animation will show the PCR experiment at the molecular level, illustrating the structure of DNA and its replication.
If you’re interested in teaching PCR in an approachable way, check out our PCR blog post .
Questions for consideration?
- How could you incorporate these virtual labs into your teaching plans?
- Are these labs better as self-paced homework assignments or small-group collaboration in class?
(1) Shaw, Vikram. (n.d.), Biochemistry Lab Techniques for the MCAT: Everything You Need to Know. Shemassian Academic Consulting. Retrieved from: https://www.shemmassianconsulting.com/blog/biochemistry-techniques-mcat#part-7-centrifugation-and-chromatography
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Biochemistry is the science and study of vital processes and chemical substances occurring within living organisms, including carbohydrates, proteins, lipids, minerals, hormones, and more.
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Experiments in Biochemistry: A Hands-on Approach (Brooks/Cole Laboratory) 2nd Edition
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- ISBN-10 049501317X
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- Publisher Cengage Learning
- Publication date February 7, 2005
- Language English
- Dimensions 8.5 x 0.91 x 10.88 inches
- Print length 400 pages
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Online lab work
Lab courses are one of the more complicated and difficult spaces to recreate or instruct through remote learning. Accept that the experience cannot be fully reproduced. Again, this is something that can be backward-designed. Start with the key learning objectives, and let that drive your decisions. If data analysis and critical thinking are part of your laboratory class outcomes, ensure they are built into the design of your lab course. AND let yourself to be creative and imperfect in design of the class.
For lower level laboratories, are there simple experiments that can be conducted at home ? Depending on the number of students, mailed pH strips and household items could be used in a titration. Alternatively, consider finding a virtual simulation from the many collections on the Internet. We all know making solutions and buffers are the bane of biochemistry students - so think about designing learning activities on these subjects.
Deep analysis of the literature is also an excellent way to build laboratory-related skills. Access a Journal of Biological Chemistry article and have the students review the methods sections - they can create presentations on various aspects of the methods of a few key papers and analyze the figures and results sections in a follow-up activity.
Demonstrations are very valid when in a pinch. You could create a video of a technique and annotate the key steps of a western blot, an SDS-PAGE gel, or protein assay, or keep your teaching assistants employed by having them create videos or demonstrations. Include simple quizzes to keep students engaged. Walk students through an enzyme assay (use some of the resource links below if you don’t have your own) and videotape the assay being conducted - perhaps even do this live in a Zoom or WebEx chat or using the meeting features in your LMS. Show the spectrophotometer as absorbance changes to talk about reactants and products. Pause and interact with the students, have them break out into groups (if your LMS allows) and make predictions on the experiment at hand. Then give them data sets to analyze. You might assign different data sets for different student groups, perhaps some that have a “flaw” and a follow-up repeated experiment.
Biomolecular modeling is another interactive option. Using Chimera, PyMOL, Jmol or other visualization programs, you can design experiments where students are asked to model active sites, mutate amino acids, and consider the effects of a proposed mutation. There are RNAseq and protein mass spectroscopy databases that can be mined for hypothesis-driven experiences. Free programs exist to modify a PDB file and predict protein or ligand docking and energy minimization. Ask students to make predictions and conduct a virtual experiment based on a PDB structure. You can take advantage of many online tutorials in this area; there are several linked examples of these in the resource list.
Shared Data Sets. If you can use data sets from your prior labs, your personal research or that of a colleague, you can set up the kinds of virtual labs discussed here. Two specific examples linked below that focus on protein biochemistry are the Malate Dehydrogenase CURE Community and BASIL virtual protein lab groups. Both have plans for running parts of a semester in virtual format using existing shareable data. CourseSource and CURE.net are other possible sources to find labs with data to convert to this format.
You could also consider having students work on a grant proposal as an alternative to wet lab techniques. Students will gain experience in formulating hypotheses, experimental design, and literature analysis. They can learn about techniques and instrumentation that they might not have available to them in the laboratory.
Finally, think of all of the times you’ve taught a laboratory and wished there was more time to have students really think about their results… Why not have them go back and be critical in their analysis? Now you have time to do some very valuable teaching to the students.
- General considerations Taken from a thread: three approaches to moving labs to an online format, resources.
Lab videos/Simulations
- LabXchange Wide collection of labs. Biotechnology/molecular biology simulators
- Merlot Wide collection of labs, some rated.
- Simulated labs by iWorx of animal physiology Data and results (.zip download)
- Interactive biology simulations (i.e. neuron, density)
- Interactive chemistry simulation
- Webmo Web-based interface to computational chemistry packages.
- Chem Collective Free chemistry lab simulations by topic and type of source.
- Chemical reaction simulator and acid base titrations Free web tool.
- Titrations (acid base and redox)
- Pearson LabBench Activities - simple lab demonstractions for introductory biology
- Learn.Genetics - Biochem/mol bio/genetics/neuroscience- virtual experiments with content explained
- Virtual labs - simple demonstrations of bio/mol bio labs
- Bio-Rad Explorer - Instructional videos that demonstrate various lab techniques
- Exploration of an interactive “Virtual and Actual Combined” teaching mode in medical developmental biology
Virtual labs
- Malate Dehydrogenase CUREs Community example of moving to a virtual lab class.
- Biochemistry Authentic Scientific Inquiry Laboratory CUREs First five modules are computational based and amenable to virtual learning.
- Bruker NMR Topspin Free NMR topspin licensing for academics.
- HHMI BioInteractive Biochemistry/Mol Bio interactive lab simulations.
- Interactive ELISA assay
IMAGES
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Maybe lesson planning is taking up too much time, you're recycling the same labs over and over, or you're a new teacher. Whatever the case, we've gathered 7 biochemistry lab experiments that you can teach your students. We've also matched accompanying virtual labs that can help teach some of the experiments. ELISA. DNA/RNA Sequencing.
Modern Biology's Introduction to Molecular Genetics provides lesson plans and complete supplies for three experiments for 16 students for just $199.95. Experiments in this series include; EXP-301 Length of the DNA Molecule: Students determine the length of a sample of DNA by electrophoresis over an agarose gel, This experiment reinforces ...
Fun science experiments to explore everything from kitchen chemistry to DIY mini drones. Easy to set up and perfect for home or school. Browse the collection and see what you want to try first! Yogurt, biofuel, biodegradable plastics, and antibiotics are all examples of products based on biotechnology research and manufacturing techniques.
(Laboratory Report 3 covers Experiments 2, 3, and 4) The Final Laboratory Report is a revision of Report 3, and thus also covers Experiments 2, 3, and 4. Note that the results from Experiment 5 are not included in any of the laboratory reports; instead, you will report your results from Experiment 5 in a poster.
Recently Updated! This series of four different lab activities all relate to flower reproduction. They have been designed to relate to each other and to stand alone. Name that Pollinator focuses on adaptations for successful pollination. Both pollen and pollen vectors are examined. Observing, data gathering, making measurements through the ...
1988-01-01. Describes an experiment to be performed in an undergraduate biochemistry laboratory that is based on a gradient centrifugation system employing a simple bench top centrifuge, a freezer, and frozen surcose gradient solution to separate macromolecules and subcellular components. (CW)
Biochemistry is the science and study of vital processes and chemical substances occurring within living organisms, including carbohydrates, proteins, lipids, minerals, hormones, and more. ... The purpose of this experiment is to find out which type of fertilizer, whether organic or inorganic, speeds the growth of plants.
This Biochemistry manual offers incredible details and explanations, so the reader is not lost during an experiment. It also provides step-by-step instructions on how to perform the experiments, as well as a results sections where one may write in the data tables provided.
Web-based interface to computational chemistry packages. Chem Collective. Free chemistry lab simulations by topic and type of source. Chemical reaction simulator and acid base titrations. Free web tool. Titrations (acid base and redox) Pearson LabBench Activities - simple lab demonstractions for introductory biology.
During this unit, you will describe both the chemical and molecular composition of a cell, and define the basic components of biological macromolecules. You will identify the forces that act in biological systems: covalent bonds, ionic bonds, hydrogen bonds, van der Waal's forces, and hydrophobicity. You will draw a generic amino acid and ...
Elementary School, Middle School, High School, College. Learn the basics about DNA sequences by examining some simple differences between groups of genes. [View Experiment] Biochemistry & cell biology Experiments, Labs and Background Information: for elementary school, middle school, high school and college students and teachers.
Here are four examples of cool and engaging experiments: 1. Gel Electrophoresis. Many introductory biology students have not learned the concept of what proteins are, or how they might be observed and compared, until they participate in a lab exercise like our EXP-101 Electrophoretic Separation of Proteins. In this experiment, students are not ...
They turn red in acidic mediums such as vinegar, purple in weakly acidic and neutral mediums such as water, blue in weakly basic mediums such as a solution of baking soda, and green, then yellow in strongly basic solutions such as drain cleaner. How to test for vitamin C at home. Many fruits and veg ...
Part 1: Introduction to biochemistry lab techniques. Welcome to our guide on experimental techniques in biochemistry. This is a high-yield topic, and a knowledge of the experimental techniques we will discuss will help you when you take your MCAT.One of the most difficult parts about learning these techniques is that they're often presented at a very complex level, but we'll provide ...
With immediate feedback, virtual lab simulations allow students to learn from mistakes and effortlessly undo and try again for an enhanced learning experience. Save time and money with our virtual lab simulations, a cost-effective solution compatible with Chromebooks and laptops. Virtual labs provide a safe space for exploration, promote ...
This book covers all essential experiments in the field of biochemistry, microbiology, and molecular biology, describing in detail the experimental approach and protocols used for procedures such as cloning, PCR, spectrophotometers, ELISA readers and sonicators.
24+ amazing units. Biochemistry Literacy for Kids revolutionizes STEM learning by making college-level science accessible to K-12 students. Developed by a Yale-educated chemistry professor, the curriculum creates a unique visual and tactile learning environment that makes high-level chemistry and biochemistry fun and rewarding for kids of any age.
EXPERIMENTS IN BIOCHEMISTRY: A HANDS-ON APPROACH, Second Edition features a variety of hands-on, classroom tested experiments that are effective in courses meeting only once a week, giving students a broad overview of the subject matter as well as a more. Contents.
Course Description. The course, which spans two thirds of a semester, provides students with a research-inspired laboratory experience that introduces standard biochemical techniques in the context of investigating a current and exciting research topic, acquired resistance to the cancer drug Gleevec. Techniques include protein expression, ….